A GLANCE AT MOLECULAR IDENTIFICATION OF BAMBOO (Poaceae: Bambusoideae)

Authors

  • Nabilah Mohamad Khairi Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia
  • Wilson Thau Lym Yong Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia
  • Julius Kulip Institute for Tropical Biology and Conservation, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia
  • Kenneth Francis Rodrigues Biotechnology Research Institute, Universiti Malaysia Sabah, Kota Kinabalu, Sabah, Malaysia

DOI:

https://doi.org/10.51200/bijb.v1i.2775

Keywords:

amplified fragment length polymorphism, DNA barcoding, random amplified polymorphic DNA, restriction fragment length polymorphism, sequence characterized amplified region, simple sequence repeat

Abstract

Conservation of plant species plays a vital role in preventing the loss of valuable plant resources. The success of conservation depends on the correct identification and characterization of plant species. Bamboo is one of the most important plants with multiple uses that have contributed to the economy and socio-economy of many people in rural areas. It is under the subfamily of Bambusoideae that includes both woody and herbaceous bamboo. Conventionally, like other plants, bamboo has been classified dependently based on morphological characteristics. However, morphological identification leads to difficulties and misclassification of bamboo species due to their infrequent flowering behaviour and peculiar reproductive biology. Since then, molecular markers have been introduced to overcome the problems associated with bamboo taxonomy and phylogeny. This paper provides an overview of the diverse, predominantly molecular techniques used to assess and determine the genetic diversity of bamboo species.

References

Alam, M. K., Sarker, R. H., & Hassan, M. A. (1997). Chemotaxonomic studies in peroxidase

isozyme of bamboos from Bangladesh. Bangladesh Journal of Botany, 26, 99 – 105.

Attigala, L., Wysocki, W. P., Duvall, M. R., & Clark, L. G. (2016). Phylogenetic estimation and

morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on

plastome phylogenomic analysis. Molecular Phylogenetics and Evolution, 101, 111 –

DOI: https://doi.org/10.1016/j.ympev.2016.05.008

Barkley, N. A., Newman, M. L., Wang, M. L., Hotchkiss, M. W., & Pederson, G. A. (2005). Assessment

of the genetic diversity and phylogenetic relationships of a temperate bamboo

collection by using transferred EST-SSR markers. Genome, 48 (4), 731 – 737. DOI:

https://doi.org/10.1139/g05-022

Biradar, D. P., Patil, V. C., Kuruvinashetti, M. S., Biradar, M. D., Patil, S. V., & Yaradoni, S. N. (2005).

Characterization of bamboo elite clones from Western ghats of India using RAPD

markers. In Proceedings of the role of biotechnology (pp. 155 – 156). Villa Gualino, Turin,

Italy.

Biswas, S. (1998). Contribution to the isozyme studies on Indian bamboo, Dendrocalamus

strictus (Roxb.) Nees with emphasis on diversity evaluation. Annals of Forestry, 5 (22),

– 172.

Bonilla, S. H., Guarnetti, R. L., Almeida, C. M. V. B., & Giannetti, B. F. (2010). Sustainability

assessment of a giant bamboo plantation in Brazil: Exploring the influence of labour,

time and space. Journal of Cleaner Production, 18 (1), 83 – 91.

Bystriakova, N., Kapos, V., Lysenko, I., & Stapleton, C. M. A. (2003). Distribution and conservation

status of forest bamboo biodiversity in the Asia-Pacific Region. Biodiversity &

Conservation, 12, 1833 – 1841. DOI: https://doi.org/10.1023/A:1024139813651

Cai, K., Zhu, L., Zhang, K., Li, L., Zhao, Z., Zeng, W., & Lin, X. (2019). Development and

characterization of EST-SSR markers from RNA-Seq data in Phyllostachys violascens.

Frontiers in Plant Science, 10, 50. DOI: https://doi.org/10.3389/fpls.2019.00050

Cai, Z. M., Zhang, Y. X., Zhang, L. N., Gao, L. M., & Li, D. Z. (2012). Testing four candidate

barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae). Journal

of Systematics and Evolution, 50 (6), 527 – 539. DOI: https://doi.org/10.1111/j.1759-

2012.00216.x

CBOL Plant Working Group 1, Hollingsworth, P. M., Forrest, L. L., Spouge, J. L., Hajibabaei, M.,

Ratnasingham, … Little, D. P. (2009). A DNA barcode for land plants. Proceedings of the

National Academy of Sciences, 106 (31), 12794 – 12797. DOI: https://doi.org/10.1073/

pnas.0905845106

Chao, C. S., & Renvoize, S. A. (1989). A revision of the species described under Arundinaria

(Gramineae) in Southeast Asia and Africa. Kew Bulletin, 44 (2), 349 – 367. DOI: https://

doi.org/10.2307/4110809

Chase, M. W., Soltis, D. E., Olmstead, R. G., Morgan, D., Les, D. H., Mishler, B. D., … Albert, V.

A. (1993). Phylogenetics of seed plants: an analysis of nucleotide sequences from

the plastid gene rbcL. Annals of the Missouri Botanical Garden, 80 (3), 528 – 580. DOI:

https://doi.org/10.2307/2399846

Chou, C. H., & Hwang, Y. H. (1985). A biochemical aspect of phylogenetic study of Bambusaceae

in Taiwan III. The genera Arthrostylidium, Chimonobambusa and Dendrocalamus.

Botanical Bulletin of Academia Sinica, 26 (22), 155 – 170.

Clark, L. G., Zhang, W., & Wendel, J. F. (1995). A phylogeny of the grass family (Poaceae)

based on ndhF sequence data. Systematic Botany, 20 (4), 436 – 460. DOI: https://doi.

org/10.2307/2419803

Das, M., Bhattacharya, S., & Pal, A. (2005). Generation and characterization of SCARs by cloning

and sequencing of RAPD products: a strategy for species-specific marker development

in bamboo. Annals of Botany, 95 (5), 835 – 841. DOI: https://doi.org/10.1093/aob/

mci088

Das, M., Bhattacharya, S., Basak, J., & Pal, A. (2007). Phylogenetic relationships among the

bamboo species as revealed by morphological characters and polymorphism

analyses. Biologia Plantarum, 51 (4), 667 – 672.

Das, M., Bhattacharya, S., Singh, P., Filgueiras, T. S., & Pal, A. (2008). Bamboo taxonomy and

diversity in the era of molecular markers. Advances in Botanical Research, 47, 225 –

DOI: https://doi.org/10.1016/S0065-2296(08)00005-0

Dev, S. A., Sijimol, K., Prathibha, P. S., Sreekumar, V. B., & Muralidharan, E. M. (2020). DNA

barcoding as a valuable molecular tool for the certification of planting materials in

bamboo. 3 Biotech, 10, 59. DOI: https://doi.org/10.1007/s13205-019-2018-8

Dransfield, S. (1992). A new species of Racemobambos (Gramineae: Bambusoideae) from

Sulawesi with notes on generic delimitation. Kew Bulletin, 47 (4), 707 – 711. DOI:

https://doi.org/10.2307/4110711

Friar, E., & Kochert, G. (1994). A study of genetic variation and evolution of Phyllostachys

(Bambusoideae: Poaceae) using nuclear restriction fragment length polymorphisms.

Theoretical and Applied Genetics, 89, 265 – 270. DOI: https://doi.org/10.1007/

BF00225152

Hamzah, T. N. T., Hakeem, K. R., & Ibrahim, F. H. (2016). Proteomics of bamboo, the fast-growing

Published

2020-12-23

How to Cite

Mohamad Khairi, N., Thau Lym Yong, W., Kulip, J. ., & Rodrigues, K. F. . (2020). A GLANCE AT MOLECULAR IDENTIFICATION OF BAMBOO (Poaceae: Bambusoideae). Borneo International Journal of Biotechnology (BIJB), 1, 19–33. https://doi.org/10.51200/bijb.v1i.2775
Total Views: 522 | Total Downloads: 530